IL_4UJD_319

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CCGCUCCCCGGCGCCG*CGCGCGCCCGG

Length

27 nucleotides

Bulged bases

4UJD|1|A2|G|254, 4UJD|1|A2|C|257

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|C|164
4UJD|1|A2|C|165
4UJD|1|A2|G|166
4UJD|1|A2|C|167
4UJD|1|A2|U|168
4UJD|1|A2|C|169
4UJD|1|A2|C|170
4UJD|1|A2|C|171
4UJD|1|A2|C|172
4UJD|1|A2|G|173
4UJD|1|A2|G|174
4UJD|1|A2|C|175
4UJD|1|A2|G|176
4UJD|1|A2|C|177
4UJD|1|A2|C|178
4UJD|1|A2|G|179
*
4UJD|1|A2|C|249
4UJD|1|A2|G|250
4UJD|1|A2|C|251
4UJD|1|A2|G|252
4UJD|1|A2|C|253
4UJD|1|A2|G|254
4UJD|1|A2|C|255
4UJD|1|A2|C|256
4UJD|1|A2|C|257
4UJD|1|A2|G|258
4UJD|1|A2|G|259

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AL

60S RIBOSOMAL PROTEIN L13

Chain Ah

60S RIBOSOMAL PROTEIN L35