IL_4UJD_321
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- GGAUUCAACCC*GGGCGCAUU
- Length
- 20 nucleotides
- Bulged bases
- 4UJD|1|A2|U|459, 4UJD|1|A2|C|460, 4UJD|1|A2|A|461, 4UJD|1|A2|A|462, 4UJD|1|A2|C|675, 4UJD|1|A2|G|676, 4UJD|1|A2|C|677
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4UJD|1|A2|G|455
4UJD|1|A2|G|456
4UJD|1|A2|A|457
4UJD|1|A2|U|458
4UJD|1|A2|U|459
4UJD|1|A2|C|460
4UJD|1|A2|A|461
4UJD|1|A2|A|462
4UJD|1|A2|C|463
4UJD|1|A2|C|464
4UJD|1|A2|C|465
*
4UJD|1|A2|G|672
4UJD|1|A2|G|673
4UJD|1|A2|G|674
4UJD|1|A2|C|675
4UJD|1|A2|G|676
4UJD|1|A2|C|677
4UJD|1|A2|A|678
4UJD|1|A2|U|679
4UJD|1|A2|U|680
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain At
- 60S RIBOSOMAL PROTEIN L28
Coloring options: