IL_4UJD_339

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGACAGGAUUG*CUCGAUUCC

Length

20 nucleotides

Bulged bases

4UJD|1|C1|A|1284, 4UJD|1|C1|G|1285, 4UJD|1|C1|G|1286, 4UJD|1|C1|A|1287, 4UJD|1|C1|A|1313

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|C1|G|1280
4UJD|1|C1|G|1281
4UJD|1|C1|A|1282
4UJD|1|C1|C|1283
4UJD|1|C1|A|1284
4UJD|1|C1|G|1285
4UJD|1|C1|G|1286
4UJD|1|C1|A|1287
4UJD|1|C1|U|1288
4UJD|1|C1|U|1289
4UJD|1|C1|G|1290
*
4UJD|1|C1|C|1309
4UJD|1|C1|U|1310
4UJD|1|C1|C|1311
4UJD|1|C1|G|1312
4UJD|1|C1|A|1313
4UJD|1|C1|U|1314
4UJD|1|C1|U|1315
4UJD|1|C1|C|1316
4UJD|1|C1|C|1317

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain CK

40S RIBOSOMAL PROTEIN ES10

Chain CM

40S RIBOSOMAL PROTEIN ES12

Chain Cd

40S RIBOSOMAL PROTEIN US14

Chain Cf

40S RIBOSOMAL PROTEIN ES31