IL_4UJE_003

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GACG*CGCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_003 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.259

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

4UJE|1|A2|G|16
4UJE|1|A2|A|17
4UJE|1|A2|C|18
4UJE|1|A2|G|19
*
4UJE|1|A3|C|138
4UJE|1|A3|G|139
4UJE|1|A3|C|140
4UJE|1|A3|C|141

Current chains

Chain A2

28S Ribosomal RNA

Chain A3

5.8S Ribosomal RNA

Nearby chains

Chain CN

60S RIBOSOMAL PROTEIN L15

Chain CX

60S RIBOSOMAL PROTEIN L23A

Chain Ch

60S RIBOSOMAL PROTEIN L35

Chain Cj

60S RIBOSOMAL PROTEIN L37