IL_4UJE_007
3D structure
- PDB id
- 4UJE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.9 Å
Loop
- Sequence
- CUCGUGGGGG*CGG
- Length
- 13 nucleotides
- Bulged bases
- 4UJE|1|A2|G|185, 4UJE|1|A2|G|188
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJE_007 not in the Motif Atlas
- Geometric match to IL_7A0S_042
- Geometric discrepancy: 0.2724
- The information below is about IL_7A0S_042
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_01003.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 214
Unit IDs
4UJE|1|A2|C|180
4UJE|1|A2|U|181
4UJE|1|A2|C|182
4UJE|1|A2|G|183
4UJE|1|A2|U|184
4UJE|1|A2|G|185
4UJE|1|A2|G|186
4UJE|1|A2|G|187
4UJE|1|A2|G|188
4UJE|1|A2|G|189
*
4UJE|1|A2|C|246
4UJE|1|A2|G|247
4UJE|1|A2|G|248
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain A3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CC
- 60S RIBOSOMAL PROTEIN L4
- Chain CL
- 60S RIBOSOMAL PROTEIN L13
- Chain CY
- 60S RIBOSOMAL PROTEIN L26
- Chain Ch
- 60S RIBOSOMAL PROTEIN L35
- Chain Cj
- 60S RIBOSOMAL PROTEIN L37
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