IL_4UJE_011

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GUGAAAC*GUGGAUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_011 not in the Motif Atlas

Geometric match to IL_5TBW_015

Geometric discrepancy: 0.1791

The information below is about IL_5TBW_015

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.7

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4UJE|1|A2|G|406
4UJE|1|A2|U|407
4UJE|1|A2|G|408
4UJE|1|A2|A|409
4UJE|1|A2|A|410
4UJE|1|A2|A|411
4UJE|1|A2|C|412
*
4UJE|1|A3|G|13
4UJE|1|A3|U|14
4UJE|1|A3|G|15
4UJE|1|A3|G|16
4UJE|1|A3|A|17
4UJE|1|A3|U|18
4UJE|1|A3|C|19

Current chains

Chain A2

28S Ribosomal RNA

Chain A3

5.8S Ribosomal RNA

Nearby chains

Chain CP

60S RIBOSOMAL PROTEIN L17

Chain Ce

60S RIBOSOMAL PROTEIN L32