IL_4UJE_027

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UC*GCA

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_027 not in the Motif Atlas

Geometric match to IL_7Q80_001

Geometric discrepancy: 0.2856

The information below is about IL_7Q80_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

4UJE|1|A2|U|955
4UJE|1|A2|C|956
*
4UJE|1|A2|G|1257
4UJE|1|A2|C|1258
4UJE|1|A2|A|1259

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CC

60S RIBOSOMAL PROTEIN L4

Chain CE

60S RIBOSOMAL PROTEIN L6

Chain CF

60S RIBOSOMAL PROTEIN L7