IL_4UJE_038

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_038 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2177

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4UJE|1|A2|C|1411
4UJE|1|A2|G|1412
4UJE|1|A2|A|1413
4UJE|1|A2|G|1414
*
4UJE|1|A2|C|1430
4UJE|1|A2|G|1431
4UJE|1|A2|A|1432
4UJE|1|A2|G|1433

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CC

60S RIBOSOMAL PROTEIN L4

Chain CF

60S RIBOSOMAL PROTEIN L7

Chain CQ

60S RIBOSOMAL PROTEIN L18