IL_4UJE_039

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

4UJE|1|A2|A|1476

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_039 not in the Motif Atlas

Homologous match to IL_8C3A_026

Geometric discrepancy: 0.4407

The information below is about IL_8C3A_026

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

4UJE|1|A2|C|1446
4UJE|1|A2|C|1447
*
4UJE|1|A2|G|1475
4UJE|1|A2|A|1476
4UJE|1|A2|G|1477

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CQ

60S RIBOSOMAL PROTEIN L18

Chain Ca

60S RIBOSOMAL PROTEIN L27A