IL_4UJE_050

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

4UJE|1|A2|G|1703

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_050 not in the Motif Atlas

Geometric match to IL_5TBW_037

Geometric discrepancy: 0.2288

The information below is about IL_5TBW_037

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

4UJE|1|A2|A|1702
4UJE|1|A2|G|1703
4UJE|1|A2|U|1704
*
4UJE|1|A2|A|1816
4UJE|1|A2|U|1817

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CF

60S RIBOSOMAL PROTEIN L7

Chain CT

60S RIBOSOMAL PROTEIN L21

Chain Cb

60S RIBOSOMAL PROTEIN L29