IL_4UJE_070

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

4UJE|1|A2|A|2289

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_070 not in the Motif Atlas

Geometric match to IL_4R4V_004

Geometric discrepancy: 0.3196

The information below is about IL_4R4V_004

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

4UJE|1|A2|U|2288
4UJE|1|A2|A|2289
4UJE|1|A2|G|2290
*
4UJE|1|A2|C|2301
4UJE|1|A2|G|2302

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain Ce

60S RIBOSOMAL PROTEIN L32