IL_4UJE_088

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

4UJE|1|A2|U|2857

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_088 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.139

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4UJE|1|A2|C|2844
4UJE|1|A2|G|2845
4UJE|1|A2|U|2846
4UJE|1|A2|A|2847
4UJE|1|A2|A|2848
4UJE|1|A2|C|2849
*
4UJE|1|A2|G|2854
4UJE|1|A2|G|2855
4UJE|1|A2|A|2856
4UJE|1|A2|U|2857
4UJE|1|A2|A|2858
4UJE|1|A2|A|2859
4UJE|1|A2|G|2860

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain B1

Small subunit ribosomal RNA; SSU rRNA

Chain Cn

60S RIBOSOMAL PROTEIN L41

Chain Cp

60S RIBOSOMAL PROTEIN L37A