IL_4UJE_099

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_099 not in the Motif Atlas

Geometric match to IL_5TBW_089

Geometric discrepancy: 0.1693

The information below is about IL_5TBW_089

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

4UJE|1|A2|G|3749
4UJE|1|A2|C|3750
*
4UJE|1|A2|G|3780
4UJE|1|A2|C|3781
4UJE|1|A2|A|3782
4UJE|1|A2|U|3783

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain B1

Small subunit ribosomal RNA; SSU rRNA

Chain Cn

60S RIBOSOMAL PROTEIN L41