IL_4UJE_110

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GUGAGGCGGG*CCCGCUC

Length

17 nucleotides

Bulged bases

4UJE|1|A2|G|4052, 4UJE|1|A2|G|4054, 4UJE|1|A2|G|4055, 4UJE|1|A2|C|4122, 4UJE|1|A2|U|4123

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJE|1|A2|G|4050
4UJE|1|A2|U|4051
4UJE|1|A2|G|4052
4UJE|1|A2|A|4053
4UJE|1|A2|G|4054
4UJE|1|A2|G|4055
4UJE|1|A2|C|4056
4UJE|1|A2|G|4057
4UJE|1|A2|G|4058
4UJE|1|A2|G|4059
*
4UJE|1|A2|C|4118
4UJE|1|A2|C|4119
4UJE|1|A2|C|4120
4UJE|1|A2|G|4121
4UJE|1|A2|C|4122
4UJE|1|A2|U|4123
4UJE|1|A2|C|4124

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain CA

60S RIBOSOMAL PROTEIN L8

Chain CG

60S RIBOSOMAL PROTEIN L7A

Chain CX

60S RIBOSOMAL PROTEIN L23A