IL_4UJE_122

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

4UJE|1|A2|A|4478, 4UJE|1|A2|C|4479

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_122 not in the Motif Atlas

Homologous match to IL_8C3A_117

Geometric discrepancy: 0.221

The information below is about IL_8C3A_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

4UJE|1|A2|C|4418
4UJE|1|A2|U|4419
*
4UJE|1|A2|A|4477
4UJE|1|A2|A|4478
4UJE|1|A2|C|4479
4UJE|1|A2|G|4480

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CB

60S RIBOSOMAL PROTEIN L3

Chain CV

60S RIBOSOMAL PROTEIN L23