IL_4UJE_151

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UAAU*AUCGA

Length

9 nucleotides

Bulged bases

4UJE|1|A3|G|94

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_151 not in the Motif Atlas

Geometric match to IL_3NPQ_006

Geometric discrepancy: 0.3842

The information below is about IL_3NPQ_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65740.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

4UJE|1|A3|U|64
4UJE|1|A3|A|65
4UJE|1|A3|A|66
4UJE|1|A3|U|67
*
4UJE|1|A3|A|91
4UJE|1|A3|U|92
4UJE|1|A3|C|93
4UJE|1|A3|G|94
4UJE|1|A3|A|95

Current chains

Chain A3

5.8S Ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain CY

60S RIBOSOMAL PROTEIN L26

Chain Ch

60S RIBOSOMAL PROTEIN L35

Chain Cj

60S RIBOSOMAL PROTEIN L37