IL_4UJE_163

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CAU*AG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_163 not in the Motif Atlas

Homologous match to IL_4V88_388

Geometric discrepancy: 0.1876

The information below is about IL_4V88_388

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

4UJE|1|B1|C|49
4UJE|1|B1|A|50
4UJE|1|B1|U|51
*
4UJE|1|B1|A|476
4UJE|1|B1|G|477

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain BJ

40S RIBOSOMAL PROTEIN S9

Chain BY

40S RIBOSOMAL PROTEIN S24