IL_4UJE_179

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UC*GGA

Length

5 nucleotides

Bulged bases

4UJE|1|B1|G|507

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_179 not in the Motif Atlas

Geometric match to IL_5J7L_019

Geometric discrepancy: 0.3137

The information below is about IL_5J7L_019

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

4UJE|1|B1|U|495
4UJE|1|B1|C|496
*
4UJE|1|B1|G|506
4UJE|1|B1|G|507
4UJE|1|B1|A|508

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain BE

40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1

Chain BJ

40S RIBOSOMAL PROTEIN S9

Chain BY

40S RIBOSOMAL PROTEIN S24