IL_4UJE_185

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CAG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_185 not in the Motif Atlas

Geometric match to IL_406D_002

Geometric discrepancy: 0.2584

The information below is about IL_406D_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

4UJE|1|B1|C|663
4UJE|1|B1|A|664
4UJE|1|B1|G|665
*
4UJE|1|B1|C|1162
4UJE|1|B1|C|1163
4UJE|1|B1|G|1164

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain BC

40S RIBOSOMAL PROTEIN S2

Chain BX

40S RIBOSOMAL PROTEIN S23