IL_4UJE_200

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

AGGUUC*GUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_200 not in the Motif Atlas

Geometric match to IL_4V88_435

Geometric discrepancy: 0.233

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

4UJE|1|B1|A|1042
4UJE|1|B1|G|1043
4UJE|1|B1|G|1044
4UJE|1|B1|U|1045
4UJE|1|B1|U|1046
4UJE|1|B1|C|1047
*
4UJE|1|B1|G|1071
4UJE|1|B1|U|1072
4UJE|1|B1|U|1073

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain BO

40S RIBOSOMAL PROTEIN S14

Chain CA

60S RIBOSOMAL PROTEIN L8