IL_4UJE_228

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_228 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.1699

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

4UJE|1|B1|G|1604
4UJE|1|B1|G|1605
4UJE|1|B1|G|1606
4UJE|1|B1|A|1607
4UJE|1|B1|U|1608
4UJE|1|B1|C|1609
4UJE|1|B1|G|1610
*
4UJE|1|B1|C|1629
4UJE|1|B1|A|1630
4UJE|1|B1|U|1631
4UJE|1|B1|G|1632
4UJE|1|B1|A|1633
4UJE|1|B1|A|1634
4UJE|1|B1|C|1635

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain BS

40S RIBOSOMAL PROTEIN S18

Chain BT

40S RIBOSOMAL PROTEIN S19