IL_4UJE_258

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GGCGAAG*UGGAGGUC

Length

15 nucleotides

Bulged bases

4UJE|1|A2|G|1556

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_258 not in the Motif Atlas

Geometric match to IL_8VTW_001

Geometric discrepancy: 0.3942

The information below is about IL_8VTW_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.7

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4UJE|1|A2|G|1528
4UJE|1|A2|G|1529
4UJE|1|A2|C|1530
4UJE|1|A2|G|1531
4UJE|1|A2|A|1532
4UJE|1|A2|A|1533
4UJE|1|A2|G|1534
*
4UJE|1|A2|U|1551
4UJE|1|A2|G|1552
4UJE|1|A2|G|1553
4UJE|1|A2|A|1554
4UJE|1|A2|G|1555
4UJE|1|A2|G|1556
4UJE|1|A2|U|1557
4UJE|1|A2|C|1558

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CA

60S RIBOSOMAL PROTEIN L8

Chain CR

60S RIBOSOMAL PROTEIN L19

Chain Cp

60S RIBOSOMAL PROTEIN L37A