IL_4UJE_267

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GGAGU*GCGCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_267 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3323

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

4UJE|1|A2|G|2518
4UJE|1|A2|G|2519
4UJE|1|A2|A|2520
4UJE|1|A2|G|2521
4UJE|1|A2|U|2522
*
4UJE|1|A2|G|2748
4UJE|1|A2|C|2749
4UJE|1|A2|G|2750
4UJE|1|A2|C|2751
4UJE|1|A2|C|2752

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain Cg

60S RIBOSOMAL PROTEIN L34

Chain Ck

60S RIBOSOMAL PROTEIN L38