IL_4UJE_270

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_270 not in the Motif Atlas

Homologous match to IL_8P9A_305

Geometric discrepancy: 0.1343

The information below is about IL_8P9A_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

4UJE|1|A2|G|2824
4UJE|1|A2|G|2825
4UJE|1|A2|A|2826
4UJE|1|A2|A|2827
4UJE|1|A2|G|2828
4UJE|1|A2|U|2829
4UJE|1|A2|C|2830
4UJE|1|A2|G|2831
4UJE|1|A2|G|2832
*
4UJE|1|A2|C|3806
4UJE|1|A2|U|3807
4UJE|1|A2|G|3808
4UJE|1|A2|U|3809
4UJE|1|A2|C|3810

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CB

60S RIBOSOMAL PROTEIN L3

Chain CV

60S RIBOSOMAL PROTEIN L23