IL_4UJE_301

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UGCA*UG

Length

6 nucleotides

Bulged bases

4UJE|1|B1|G|1330, 4UJE|1|B1|C|1331

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJE_301 not in the Motif Atlas

Geometric match to IL_1FUF_002

Geometric discrepancy: 0.3482

The information below is about IL_1FUF_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

4UJE|1|B1|U|1329
4UJE|1|B1|G|1330
4UJE|1|B1|C|1331
4UJE|1|B1|A|1332
*
4UJE|1|B1|U|1499
4UJE|1|B1|G|1500

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain BD

40S RIBOSOMAL PROTEIN S3

Chain BU

40S RIBOSOMAL PROTEIN S20