IL_4UJE_312

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GGAUUCAACCC*GGGCGCAUU

Length

20 nucleotides

Bulged bases

4UJE|1|A2|U|459, 4UJE|1|A2|C|460, 4UJE|1|A2|A|461, 4UJE|1|A2|A|462, 4UJE|1|A2|C|675, 4UJE|1|A2|G|676, 4UJE|1|A2|C|677

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJE|1|A2|G|455
4UJE|1|A2|G|456
4UJE|1|A2|A|457
4UJE|1|A2|U|458
4UJE|1|A2|U|459
4UJE|1|A2|C|460
4UJE|1|A2|A|461
4UJE|1|A2|A|462
4UJE|1|A2|C|463
4UJE|1|A2|C|464
4UJE|1|A2|C|465
*
4UJE|1|A2|G|672
4UJE|1|A2|G|673
4UJE|1|A2|G|674
4UJE|1|A2|C|675
4UJE|1|A2|G|676
4UJE|1|A2|C|677
4UJE|1|A2|A|678
4UJE|1|A2|U|679
4UJE|1|A2|U|680

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain Ct

60S RIBOSOMAL PROTEIN L28