IL_4UJE_329

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GGACAGGAUUG*CUCGAUUCC

Length

20 nucleotides

Bulged bases

4UJE|1|B1|A|1284, 4UJE|1|B1|G|1285, 4UJE|1|B1|G|1286, 4UJE|1|B1|A|1287, 4UJE|1|B1|A|1313

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJE|1|B1|G|1280
4UJE|1|B1|G|1281
4UJE|1|B1|A|1282
4UJE|1|B1|C|1283
4UJE|1|B1|A|1284
4UJE|1|B1|G|1285
4UJE|1|B1|G|1286
4UJE|1|B1|A|1287
4UJE|1|B1|U|1288
4UJE|1|B1|U|1289
4UJE|1|B1|G|1290
*
4UJE|1|B1|C|1309
4UJE|1|B1|U|1310
4UJE|1|B1|C|1311
4UJE|1|B1|G|1312
4UJE|1|B1|A|1313
4UJE|1|B1|U|1314
4UJE|1|B1|U|1315
4UJE|1|B1|C|1316
4UJE|1|B1|C|1317

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain BK

40S RIBOSOMAL PROTEIN S10

Chain BM

40S RIBOSOMAL PROTEIN S12

Chain Bd

40S RIBOSOMAL PROTEIN S29

Chain Bf

UBIQUITIN-40S RIBOSOMAL PROTEIN S27A