IL_4UY8_023

3D structure

PDB id

4UY8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

4UY8|1|A|G|776, 4UY8|1|A|A|788, 4UY8|1|A|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UY8_023 not in the Motif Atlas

Homologous match to IL_7RQB_023

Geometric discrepancy: 0.08

The information below is about IL_7RQB_023

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.6

Basepair signature

cWW-cWW

Number of instances in this motif group

7

Unit IDs

4UY8|1|A|G|775
4UY8|1|A|G|776
4UY8|1|A|G|777
*
4UY8|1|A|C|787
4UY8|1|A|A|788
4UY8|1|A|A|789
4UY8|1|A|U|790
4UY8|1|A|C|791

Current chains

Chain A

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34

Chain 7

TRYPTOPHANASE

Chain C

50S RIBOSOMAL PROTEIN L2

Chain S

50S RIBOSOMAL PROTEIN L22