IL_4UY8_069

3D structure

PDB id

4UY8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

4UY8|1|A|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UY8_069 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1327

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4UY8|1|A|U|1712
4UY8|1|A|A|1713
4UY8|1|A|U|1714
4UY8|1|A|G|1715
4UY8|1|A|U|1716
4UY8|1|A|A|1717
4UY8|1|A|G|1718
*
4UY8|1|A|U|1742
4UY8|1|A|G|1743
4UY8|1|A|A|1744
4UY8|1|A|A|1745
4UY8|1|A|A|1746

Current chains

Chain A

RRNA-23S RIBOSOMAL RNA

Nearby chains