IL_4UY8_084

3D structure

PDB id

4UY8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

4UY8|1|A|U|2068

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UY8_084 not in the Motif Atlas

Homologous match to IL_7A0S_075

Geometric discrepancy: 0.1286

The information below is about IL_7A0S_075

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

4UY8|1|A|G|2067
4UY8|1|A|U|2068
4UY8|1|A|G|2069
*
4UY8|1|A|C|2442
4UY8|1|A|C|2443

Current chains

Chain A

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain E

50S RIBOSOMAL PROTEIN L4

Chain L

50S RIBOSOMAL PROTEIN L15