IL_4UY8_111

3D structure

PDB id

4UY8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UY8_111 not in the Motif Atlas

Homologous match to IL_5J7L_353

Geometric discrepancy: 0.0654

The information below is about IL_5J7L_353

Detailed Annotation

Multiple bulged bases with non-canonical cWW

Broad Annotation

Multiple bulged bases with non-canonical cWW

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

4UY8|1|A|G|2843
4UY8|1|A|G|2844
4UY8|1|A|U|2845
4UY8|1|A|G|2846
*
4UY8|1|A|C|2870
4UY8|1|A|U|2871
4UY8|1|A|A|2872
4UY8|1|A|A|2873
4UY8|1|A|C|2874

Current chains

Chain A

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain N

50S RIBOSOMAL PROTEIN L17

Chain P

50S RIBOSOMAL PROTEIN L19