IL_4UYK_005

3D structure

PDB id

4UYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a Signal Recognition Particle Alu domain in the elongation arrest conformation

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

GGCG*CCAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4UYK|1|R|G|77
4UYK|1|R|G|78
4UYK|1|R|C|79
4UYK|1|R|G|80
*
4UYK|1|R|C|121
4UYK|1|R|C|122
4UYK|1|R|A|123
4UYK|1|R|C|124

Current chains

Chain R

SRP RNA

Nearby chains

Chain A

SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN

Chain B

SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN