3D structure

PDB id
4V19 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the large subunit of the mammalian mitoribosome, part 1 of 2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GGAACUCGG*CUGUC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V19_059 not in the Motif Atlas
Homologous match to IL_4WF9_117
Geometric discrepancy: 0.0876
The information below is about IL_4WF9_117
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_22854.4
Basepair signature
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
Number of instances in this motif group
7

Unit IDs

4V19|1|A|G|799
4V19|1|A|G|800
4V19|1|A|A|801
4V19|1|A|A|802
4V19|1|A|C|803
4V19|1|A|U|804
4V19|1|A|C|805
4V19|1|A|G|806
4V19|1|A|G|807
*
4V19|1|A|C|983
4V19|1|A|U|984
4V19|1|A|G|985
4V19|1|A|U|986
4V19|1|A|C|987

Current chains

Chain A
MITORIBOSOMAL 16S RRNA

Nearby chains

Chain E
MITORIBOSOMAL PROTEIN UL3M, MRPL3
Chain O
MITORIBOSOMAL PROTEIN UL14M, MRPL14
Chain T
MITORIBOSOMAL PROTEIN BL19M, MRPL19

Coloring options:


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