4V19 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V19_001 | 1/A/54:61 | No text annotation Not in a motif group | geometric HL_4WF9_006 HL_06192.4 | |
| HL_4V19_002 | 1/A/80:86 | No text annotation Not in a motif group | geometric HL_7A0S_008 HL_67216.8 | |
| HL_4V19_003 | 1/A/121:126 | GNRA Not in a motif group | homologous HL_7A0S_015 HL_85603.2 | |
| HL_4V19_004 | 1/A/166:174 | No text annotation Not in a motif group | homologous HL_7RQB_017 NA | |
| HL_4V19_005 | 1/A/182:191 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_5J7L_150 HL_23932.1 | |
| HL_4V19_006 | 1/A/219:224 | No text annotation Not in a motif group | geometric HL_7RQB_011 NA | |
| HL_4V19_007 | 1/A/269:276 | GNRA with one bulged base Not in a motif group | geometric HL_3D0U_003 HL_58029.1 | |
| HL_4V19_008 | 1/A/290:299 | No text annotation Not in a motif group | homologous HL_7RQB_023 NA | |
| HL_4V19_009 | 1/A/325:331 | No text annotation Not in a motif group | homologous HL_7RQB_024 NA | |
| HL_4V19_010 | 1/A/371:376 | No text annotation Not in a motif group | homologous HL_7RQB_025 NA | |
| HL_4V19_011 | 1/A/400:409 | No text annotation Not in a motif group | ||
| HL_4V19_012 | 1/A/441:448 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_85603.2 | |
| HL_4V19_013 | 1/A/461:468 | No text annotation Not in a motif group | homologous HL_5J7L_160 HL_28421.1 | |
| HL_4V19_014 | 1/A/507:517 | No text annotation Not in a motif group | homologous HL_6PRV_001 HL_61911.1 | |
| HL_4V19_015 | 1/A/534:541 | No text annotation Not in a motif group | homologous HL_6PRV_002 HL_84085.4 | |
| HL_4V19_016 | 1/A/611:618 | No text annotation Not in a motif group | geometric HL_2Y9H_005 HL_41181.1 | |
| HL_4V19_041 | 1/A/652:655 | No text annotation Not in a motif group | geometric HL_8C3A_072 HL_46535.1 | |
| HL_4V19_018 | 1/A/686:691 | No text annotation Not in a motif group | geometric HL_5TBW_044 HL_09829.2 | |
| HL_4V19_019 | 1/A/729:732 | No text annotation Not in a motif group | geometric HL_7A0S_039 HL_11871.1 | |
| HL_4V19_020 | 1/A/758:765 | No text annotation Not in a motif group | homologous HL_7RQB_040 NA | |
| HL_4V19_021 | 1/A/827:837 | No text annotation Not in a motif group | homologous HL_5J7L_178 HL_43613.6 | |
| HL_4V19_022 | 1/A/848:862 | No text annotation Not in a motif group | ||
| HL_4V19_025 | 1/A/942:950 | No text annotation Not in a motif group | homologous HL_7A0S_048 HL_51824.2 | |
| HL_4V19_026 | 1/A/1020:1029 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.7 | |
| HL_4V19_028 | 1/A/1146:1154 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_4V19_029 | 1/A/1162:1174 | No text annotation Not in a motif group | ||
| HL_4V19_030 | 1/A/1185:1188 | No text annotation Not in a motif group | geometric HL_4V88_192 HL_46535.1 | |
| HL_4V19_031 | 1/A/1196:1203 | No text annotation Not in a motif group | geometric HL_4WF9_053 HL_10397.1 | |
| HL_4V19_032 | 1/A/1236:1241 | No text annotation Not in a motif group | geometric HL_2Y9H_004 HL_32095.1 | |
| HL_4V19_033 | 1/A/1292:1300 | No text annotation Not in a motif group | homologous HL_5J7L_193 HL_06192.4 | |
| HL_4V19_034 | 1/A/1349:1356 | No text annotation Not in a motif group | homologous HL_4WF9_057 HL_78499.1 | |
| HL_4V19_035 | 1/A/1372:1378 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_22584.2 | |
| HL_4V19_036 | 1/A/1415:1420 | GNRA Not in a motif group | homologous HL_7RQB_063 NA | |
| HL_4V19_037 | 1/A/1459:1464 | GNRA Not in a motif group | geometric HL_5Y7M_002 HL_85603.2 | |
| HL_4V19_038 | 1/A/1487:1493 | No text annotation Not in a motif group | ||
| HL_4V19_039 | 1/A/1512:1530 | No text annotation Not in a motif group | ||
| HL_4V19_040 | 1/A/1555:1563 | No text annotation Not in a motif group | geometric HL_5J7L_201 HL_64690.3 | |
| HL_4V19_042 | 1/B/13:23 | No text annotation Not in a motif group | geometric HL_4V9F_003 HL_32095.1 | |
| HL_4V19_043 | 1/B/32:40 | No text annotation Not in a motif group | geometric HL_8H1B_001 HL_77232.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V19_017 | No text annotation | ||
| HL_4V19_023 | No text annotation | ||
| HL_4V19_024 | No text annotation | ||
| HL_4V19_027 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V19_001 | 1/A/2:4, 1/A/146:151 | No text annotation Not in a motif group | ||
| IL_4V19_002 | 1/A/4:8, 1/A/131:146 | No text annotation Not in a motif group | ||
| IL_4V19_003 | 1/A/12:13, 1/A/103:105 | Single bulged A Not in a motif group | homologous IL_7A0S_002 IL_37497.8 | |
| IL_4V19_004 | 1/A/70:73, 1/A/92:95 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3R2D_002 IL_86432.1 | |
| IL_4V19_005 | 1/A/73:79, 1/A/87:92 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5J7L_251 IL_76042.3 | |
| IL_4V19_006 | 1/A/180:182, 1/A/191:193 | Isolated non-canonical cWW Not in a motif group | homologous IL_7A0S_011 IL_64928.1 | |
| IL_4V19_007 | 1/A/213:215, 1/A/229:231 | No text annotation Not in a motif group | geometric IL_5Y7M_007 IL_74602.1 | |
| IL_4V19_008 | 1/A/215:218, 1/A/225:229 | No text annotation Not in a motif group | ||
| IL_4V19_009 | 1/A/239:241, 1/A/352:354 | Isolated non-canonical cWW Not in a motif group | homologous IL_4WF9_020 IL_64928.1 | |
| IL_4V19_010 | 1/A/241:245, 1/A/345:352 | tHW-tHW cross-strand stack Not in a motif group | geometric IL_7RQB_018 NA | |
| IL_4V19_011 | 1/A/248:250, 1/A/340:342 | No text annotation Not in a motif group | geometric IL_3LA5_001 NA | |
| IL_4V19_012 | 1/A/258:260, 1/A/315:317 | Isolated non-canonical cWW Not in a motif group | geometric IL_6IA2_002 IL_64928.1 | |
| IL_4V19_013 | 1/A/264:265, 1/A/309:311 | Single bulged A Not in a motif group | geometric IL_4WF9_022 IL_37497.8 | |
| IL_4V19_014 | 1/A/284:287, 1/A/302:304 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 NA | |
| IL_4V19_015 | 1/A/321:323, 1/A/333:337 | Multiple bulged bases Not in a motif group | geometric IL_4WF9_027 IL_90991.8 | |
| IL_4V19_016 | 1/A/393:399, 1/A/410:416 | No text annotation Not in a motif group | ||
| IL_4V19_017 | 1/A/477:479, 1/A/586:587 | Single bulged C Not in a motif group | homologous IL_5J7L_276 IL_61258.13 | |
| IL_4V19_018 | 1/A/500:502, 1/A/522:524 | Isolated near basepair Not in a motif group | geometric IL_2ZI0_001 IL_33104.1 | |
| IL_4V19_019 | 1/A/502:505, 1/A/519:522 | No text annotation Not in a motif group | geometric IL_5D8H_002 IL_92446.1 | |
| IL_4V19_020 | 1/A/529:532, 1/A/543:544 | No text annotation Not in a motif group | homologous IL_6PRV_002 NA | |
| IL_4V19_021 | 1/A/638:645, 1/A/1004:1010 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.8 | |
| IL_4V19_022 | 1/A/661:664, 1/A/771:777 | No text annotation Not in a motif group | ||
| IL_4V19_023 | 1/A/680:685, 1/A/692:695 | C-loop Not in a motif group | homologous IL_7RQB_051 NA | |
| IL_4V19_058 | 1/A/708:711, 1/A/741:749 | No text annotation Not in a motif group | ||
| IL_4V19_025 | 1/A/717:729, 1/A/732:735 | No text annotation Not in a motif group | ||
| IL_4V19_026 | 1/A/784:790, 1/A/996:999 | No text annotation Not in a motif group | geometric IL_5TBW_074 IL_49460.2 | |
| IL_4V19_027 | 1/A/796:798, 1/A/988:990 | Isolated tWW turn Not in a motif group | homologous IL_5J7L_305 IL_54997.8 | |
| IL_4V19_028 | 1/A/799:802, 1/A/986:987 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_066 NA | |
| IL_4V19_059 | 1/A/799:807, 1/A/983:987 | No text annotation Not in a motif group | homologous IL_4WF9_117 IL_22854.1 | |
| IL_4V19_029 | 1/A/802:807, 1/A/983:986 | Intercalated tWH Not in a motif group | homologous IL_4WF9_065 IL_68582.1 | |
| IL_4V19_030 | 1/A/807:815, 1/A/980:983 | No text annotation Not in a motif group | ||
| IL_4V19_031 | 1/A/820:821, 1/A/973:975 | Single bulged A Not in a motif group | homologous IL_7RQB_069 NA | |
| IL_4V19_032 | 1/A/878:881, 1/A/896:897 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.4 | |
| IL_4V19_033 | 1/A/882:883, 1/A/892:895 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_92880.1 | |
| IL_4V19_034 | 1/A/926:927, 1/A/957:960 | Multiple bulged bases Not in a motif group | geometric IL_7V9E_001 IL_59677.4 | |
| IL_4V19_035 | 1/A/927:938, 1/A/954:957 | No text annotation Not in a motif group | ||
| IL_4V19_036 | 1/A/1043:1045, 1/A/1438:1439 | Major groove platform Not in a motif group | homologous IL_7RQB_078 NA | |
| IL_4V19_037 | 1/A/1047:1049, 1/A/1433:1436 | No text annotation Not in a motif group | homologous IL_4WF9_079 IL_54678.6 | |
| IL_4V19_038 | 1/A/1060:1062, 1/A/1263:1264 | Single bulged U Not in a motif group | homologous IL_7RQB_080 NA | |
| IL_4V19_039 | 1/A/1063:1064, 1/A/1259:1262 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 NA | |
| IL_4V19_040 | 1/A/1073:1076, 1/A/1136:1138 | Minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_031 NA | |
| IL_4V19_041 | 1/A/1078:1080, 1/A/1132:1134 | Isolated non-canonical cWW Not in a motif group | homologous IL_5J7L_326 IL_64928.1 | |
| IL_4V19_042 | 1/A/1083:1085, 1/A/1124:1129 | No text annotation Not in a motif group | ||
| IL_4V19_043 | 1/A/1190:1194, 1/A/1205:1209 | Triple sheared Not in a motif group | geometric IL_5J7L_274 IL_08257.1 | |
| IL_4V19_044 | 1/A/1274:1275, 1/A/1319:1321 | Single stack bend Not in a motif group | geometric IL_4WF9_089 IL_11389.1 | |
| IL_4V19_045 | 1/A/1275:1276, 1/A/1317:1319 | Major groove platform Not in a motif group | homologous IL_7RQB_092 NA | |
| IL_4V19_046 | 1/A/1277:1280, 1/A/1314:1316 | Major groove platform with extra pair Not in a motif group | geometric IL_7RQB_093 NA | |
| IL_4V19_047 | 1/A/1280:1282, 1/A/1310:1314 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_4WF9_092 IL_47499.1 | |
| IL_4V19_048 | 1/A/1287:1291, 1/A/1301:1305 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_93820.1 | |
| IL_4V19_049 | 1/A/1328:1329, 1/A/1401:1403 | Major groove platform Not in a motif group | homologous IL_7RQB_096 NA | |
| IL_4V19_050 | 1/A/1331:1333, 1/A/1395:1399 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_097 NA | |
| IL_4V19_051 | 1/A/1333:1334, 1/A/1392:1395 | No text annotation Not in a motif group | geometric IL_5J7L_341 IL_24807.1 | |
| IL_4V19_052 | 1/A/1342:1344, 1/A/1361:1365 | No text annotation Not in a motif group | ||
| IL_4V19_053 | 1/A/1412:1413, 1/A/1422:1424 | Single bulged A Not in a motif group | homologous IL_7RQB_101 NA | |
| IL_4V19_054 | 1/A/1452:1459, 1/A/1464:1470 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5TBW_116 IL_04346.8 | |
| IL_4V19_055 | 1/A/1481:1485, 1/A/1495:1497 | C-loop Not in a motif group | geometric IL_7RQB_051 NA | |
| IL_4V19_056 | 1/A/1485:1487, 1/A/1493:1495 | Isolated non-canonical cWW Not in a motif group | geometric IL_6IA2_005 IL_64928.1 | |
| IL_4V19_057 | 1/A/1505:1510, 1/A/1532:1537 | No text annotation Not in a motif group | geometric IL_4QLM_002 IL_55953.3 | |
| IL_4V19_060 | 1/B/3:5, 1/B/65:67 | Isolated non-canonical cWW Not in a motif group | geometric IL_8C3A_130 IL_64928.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V19_024 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V19_007 | 1/A/8:11, 1/A/106:120, 1/A/127:131 | No text annotation Not in a motif group | ||
| J3_4V19_001 | 1/A/250:256, 1/A/319:321, 1/A/337:340 | No text annotation Not in a motif group | homologous J3_4WF9_002 NA | |
| J3_4V19_002 | 1/A/265:267, 1/A/278:282, 1/A/306:309 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_4V19_008 | 1/A/481:500, 1/A/524:529, 1/A/544:584 | No text annotation Not in a motif group | ||
| J3_4V19_003 | 1/A/667:674, 1/A/753:757, 1/A/766:768 | No text annotation Not in a motif group | ||
| J3_4V19_004 | 1/A/674:676, 1/A/699:706, 1/A/751:753 | No text annotation Not in a motif group | ||
| J3_4V19_009 | 1/A/1180:1181, 1/A/1223:1234, 1/A/1243:1249 | No text annotation Not in a motif group | ||
| J3_4V19_005 | 1/A/1338:1341, 1/A/1366:1368, 1/A/1382:1388 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
| J4_4V19_001 | 1/A/646:649, 1/A/658:659, 1/A/779:782, 1/A/1001:1003 | No text annotation Not in a motif group | ||
| J4_4V19_002 | 1/A/667:676, 1/A/699:706, 1/A/751:757, 1/A/766:768 | No text annotation Not in a motif group | ||
| J4_4V19_003 | 1/A/822:826, 1/A/838:843, 1/A/867:872, 1/A/967:972 | No text annotation Not in a motif group | ||
| J4_4V19_004 | 1/A/874:876, 1/A/899:900, 1/A/917:926, 1/A/960:965 | No text annotation Not in a motif group | homologous J4_9DFE_008 NA | |
| J4_4V19_005 | 1/A/1444:1446, 1/A/1476:1477, 1/A/1501:1503, 1/A/1539:1541 | No text annotation Not in a motif group | ||
| J4_4V19_006 | 1/B/7:10, 1/B/26:28, 1/B/44:49, 1/B/62:63 | No text annotation Not in a motif group | ||
| J5_4V19_001 | 1/A/200:209, 1/A/235:238, 1/A/355:358, 1/A/603:607, 1/A/622:632 | No text annotation Not in a motif group | ||
| J5_4V19_002 | 1/A/1050:1057, 1/A/1267:1274, 1/A/1321:1328, 1/A/1403:1409, 1/A/1427:1432 | No text annotation Not in a motif group | ||
| J5_4V19_003 | 1/A/1067:1070, 1/A/1141:1144, 1/A/1156:1157, 1/A/1179:1180, 1/A/1249:1256 | No text annotation Not in a motif group | homologous J5_7A0S_007 NA | |
| J6_4V19_001 | 1/A/362:368, 1/A/379:383, 1/A/426:433, 1/A/456:460, 1/A/469:474, 1/A/590:599 | No text annotation Not in a motif group | ||
| J6_4V19_002 | 1/A/1067:1070, 1/A/1141:1144, 1/A/1156:1157, 1/A/1179:1181, 1/A/1223:1234, 1/A/1243:1256 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
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