IL_4V49_055

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V49_055 not in the Motif Atlas

Geometric match to IL_4E48_006

Geometric discrepancy: 0.13

The information below is about IL_4E48_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V49|1|AA|G|1405
4V49|1|AA|U|1406
4V49|1|AA|C|1407
*
4V49|1|AA|G|1494
4V49|1|AA|U|1495
4V49|1|AA|C|1496

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AU

mRNA

Chain AW

Transfer RNA; tRNA

Chain B0

Large subunit ribosomal RNA; LSU rRNA