IL_4V49_072

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V49_072 not in the Motif Atlas

Homologous match to IL_7A0S_011

Geometric discrepancy: 0.2019

The information below is about IL_7A0S_011

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V49|1|B0|C|573
4V49|1|B0|C|574
4V49|1|B0|U|575
*
4V49|1|B0|A|584
4V49|1|B0|U|585
4V49|1|B0|G|586

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BJ

50S ribosomal protein L15

Chain BO

50S ribosomal protein L20

Chain BP

50S ribosomal protein L21