IL_4V49_091

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

UCA*UA

Length

5 nucleotides

Bulged bases

4V49|1|B0|C|1006

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V49_091 not in the Motif Atlas

Homologous match to IL_7A0S_032

Geometric discrepancy: 0.3362

The information below is about IL_7A0S_032

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

4V49|1|B0|U|1005
4V49|1|B0|C|1006
4V49|1|B0|A|1007
*
4V49|1|B0|U|1170
4V49|1|B0|A|1171

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BH

50S ribosomal protein L13

Chain BO

50S ribosomal protein L20

Chain BP

50S ribosomal protein L21

Chain BX

50S ribosomal protein L30