3D structure

PDB id
4V49 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
8.7 Å

Loop

Sequence
AUGAGUAA*UGAAAUU
Length
15 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V49_105 not in the Motif Atlas
Homologous match to IL_7RQB_049
Geometric discrepancy: 0.2129
The information below is about IL_7RQB_049
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.7
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

4V49|1|B0|A|1275
4V49|1|B0|U|1276
4V49|1|B0|G|1277
4V49|1|B0|A|1278
4V49|1|B0|G|1279
4V49|1|B0|U|1280
4V49|1|B0|A|1281
4V49|1|B0|A|1282
*
4V49|1|B0|U|1994
4V49|1|B0|G|1995
4V49|1|B0|A|1996
4V49|1|B0|A|1997
4V49|1|B0|A|1998
4V49|1|B0|U|1999
4V49|1|B0|U|2000

Current chains

Chain B0
23S RIBOSOMAL RNA

Nearby chains

Chain BC
50S ribosomal protein L4
Chain BQ
50S ribosomal protein L22
Chain BZ
50S ribosomal protein L32

Coloring options:


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