IL_4V49_123

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

CGUAAC*GAAGAAG

Length

13 nucleotides

Bulged bases

4V49|1|B0|G|1716

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V49_123 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.2906

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4V49|1|B0|C|1703
4V49|1|B0|G|1704
4V49|1|B0|U|1705
4V49|1|B0|A|1706
4V49|1|B0|A|1707
4V49|1|B0|C|1708
*
4V49|1|B0|G|1713
4V49|1|B0|A|1714
4V49|1|B0|A|1715
4V49|1|B0|G|1716
4V49|1|B0|A|1717
4V49|1|B0|A|1718
4V49|1|B0|G|1719

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BA

50S ribosomal protein L2