IL_4V49_124

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

GGC*GAUC

Length

7 nucleotides

Bulged bases

4V49|1|B0|A|1964

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V49_124 not in the Motif Atlas

Geometric match to IL_1XJR_003

Geometric discrepancy: 0.2294

The information below is about IL_1XJR_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V49|1|B0|G|1760
4V49|1|B0|G|1761
4V49|1|B0|C|1762
*
4V49|1|B0|G|1963
4V49|1|B0|A|1964
4V49|1|B0|U|1965
4V49|1|B0|C|1966

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains