IL_4V49_128

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

4V49|1|B0|A|1839, 4V49|1|B0|A|1840

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V49_128 not in the Motif Atlas

Homologous match to IL_7A0S_068

Geometric discrepancy: 0.335

The information below is about IL_7A0S_068

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

4V49|1|B0|G|1838
4V49|1|B0|A|1839
4V49|1|B0|A|1840
4V49|1|B0|G|1841
*
4V49|1|B0|C|1876
4V49|1|B0|C|1877

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA