IL_4V49_143

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

CUGA*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V49_143 not in the Motif Atlas

Homologous match to IL_7RQB_093

Geometric discrepancy: 0.2833

The information below is about IL_7RQB_093

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

4V49|1|B0|C|2435
4V49|1|B0|U|2436
4V49|1|B0|G|2437
4V49|1|B0|A|2438
*
4V49|1|B0|U|2472
4V49|1|B0|G|2473
4V49|1|B0|G|2474

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain AW

Transfer RNA; tRNA

Chain BK

50S ribosomal protein L16