IL_4V49_147

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

4V49|1|B0|G|2555, 4V49|1|B0|A|2556

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V49_147 not in the Motif Atlas

Geometric match to IL_4V9F_087

Geometric discrepancy: 0.1836

The information below is about IL_4V9F_087

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

28

Unit IDs

4V49|1|B0|C|2489
4V49|1|B0|U|2490
4V49|1|B0|C|2491
*
4V49|1|B0|G|2553
4V49|1|B0|C|2554
4V49|1|B0|G|2555
4V49|1|B0|A|2556
4V49|1|B0|G|2557

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain AW

Transfer RNA; tRNA

Chain BB

50S ribosomal protein L3

Chain BZ

50S ribosomal protein L32