IL_4V49_156

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V49_156 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.1994

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V49|1|B0|G|2717
4V49|1|B0|A|2718
4V49|1|B0|U|2719
4V49|1|B0|A|2720
4V49|1|B0|A|2721
4V49|1|B0|C|2722
*
4V49|1|B0|G|2742
4V49|1|B0|G|2743
4V49|1|B0|A|2744
4V49|1|B0|A|2745
4V49|1|B0|G|2746
4V49|1|B0|C|2747

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BE

50S ribosomal protein L6

Chain BH

50S ribosomal protein L13