IL_4V49_157

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

GG*UGC

Length

5 nucleotides

Bulged bases

4V49|1|B0|G|2854

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V49_157 not in the Motif Atlas

Homologous match to IL_7A0S_099

Geometric discrepancy: 0.4919

The information below is about IL_7A0S_099

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

4V49|1|B0|G|2813
4V49|1|B0|G|2814
*
4V49|1|B0|U|2853
4V49|1|B0|G|2854
4V49|1|B0|C|2855

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BL

50S ribosomal protein L17