IL_4V49_158

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

GGC*GGAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V49_158 not in the Motif Atlas

Homologous match to IL_7A0S_100

Geometric discrepancy: 0.3368

The information below is about IL_7A0S_100

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31531.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

13

Unit IDs

4V49|1|B0|G|2818
4V49|1|B0|G|2819
4V49|1|B0|C|2820
*
4V49|1|B0|G|2846
4V49|1|B0|G|2847
4V49|1|B0|A|2848
4V49|1|B0|C|2849

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BL

50S ribosomal protein L17

Chain BN

50S ribosomal protein L19