3D structure

PDB id
4V49 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
8.7 Å

Loop

Sequence
GGC*GGAC
Length
7 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V49_158 not in the Motif Atlas
Homologous match to IL_7A0S_100
Geometric discrepancy: 0.3368
The information below is about IL_7A0S_100
Detailed Annotation
Decoding loop related
Broad Annotation
Decoding loop related
Motif group
IL_31531.3
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
13

Unit IDs

4V49|1|B0|G|2818
4V49|1|B0|G|2819
4V49|1|B0|C|2820
*
4V49|1|B0|G|2846
4V49|1|B0|G|2847
4V49|1|B0|A|2848
4V49|1|B0|C|2849

Current chains

Chain B0
23S RIBOSOMAL RNA

Nearby chains

Chain BL
50S ribosomal protein L17
Chain BN
50S ribosomal protein L19

Coloring options:


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