IL_4V49_165

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

CAC*GCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V49_165 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.2242

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V49|1|B9|C|19
4V49|1|B9|A|20
4V49|1|B9|C|21
*
4V49|1|B9|G|66
4V49|1|B9|C|67
4V49|1|B9|A|68
4V49|1|B9|G|69

Current chains

Chain B9

5S RIBOSOMAL RNA

Nearby chains

Chain B0

Large subunit ribosomal RNA; LSU rRNA

Chain BT

general stress protein Ctc