IL_4V49_185

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

GGAACUUUG*CUGUC

Length

14 nucleotides

Bulged bases

4V49|1|B0|G|1975

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V49_185 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.3214

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

4V49|1|B0|G|1683
4V49|1|B0|G|1684
4V49|1|B0|A|1685
4V49|1|B0|A|1686
4V49|1|B0|C|1687
4V49|1|B0|U|1688
4V49|1|B0|U|1689
4V49|1|B0|U|1690
4V49|1|B0|G|1691
*
4V49|1|B0|C|1973
4V49|1|B0|U|1974
4V49|1|B0|G|1975
4V49|1|B0|U|1976
4V49|1|B0|C|1977

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BB

50S ribosomal protein L3

Chain BI

50S ribosomal protein L14