IL_4V49_196

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

UAC*GAG

Length

6 nucleotides

Bulged bases

4V49|1|B0|A|1233

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V49_196 not in the Motif Atlas

Homologous match to IL_7A0S_044

Geometric discrepancy: 0.3393

The information below is about IL_7A0S_044

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4V49|1|B0|U|1232
4V49|1|B0|A|1233
4V49|1|B0|C|1234
*
4V49|1|B0|G|1241
4V49|1|B0|A|1242
4V49|1|B0|G|1243

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BO

50S ribosomal protein L20

Chain BP

50S ribosomal protein L21