IL_4V49_199

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

ACGA*UCUAU

Length

9 nucleotides

Bulged bases

4V49|1|B0|C|2038, 4V49|1|B0|C|2591, 4V49|1|B0|U|2592, 4V49|1|B0|A|2593

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V49_199 not in the Motif Atlas

Homologous match to IL_9DFE_079

Geometric discrepancy: 0.4375

The information below is about IL_9DFE_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70335.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V49|1|B0|A|2037
4V49|1|B0|C|2038
4V49|1|B0|G|2039
4V49|1|B0|A|2040
*
4V49|1|B0|U|2590
4V49|1|B0|C|2591
4V49|1|B0|U|2592
4V49|1|B0|A|2593
4V49|1|B0|U|2594

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BB

50S ribosomal protein L3

Chain BZ

50S ribosomal protein L32